Rodriguez F., Yushenova IA, DiCorpo D., and Arkhipova I.R. (2021). Bacterial N4-methylcytosine as an epigenetic mark in eukaryotic DNA.
Paul, B.G., Yushenova, I.A., and Arkhipova, I.R. (2021). The Diversity of Reverse Transcriptases. In: Retrotransposons; A. Gabriel, ed. World Scientific Publishing: Singapore (in press).
Craig R.J., Yushenova I.A., Rodriguez F., and Arkhipova I.R. (2021). An ancient clade of Penelope-like retroelements with permuted domains is present in early-branching plants and protists, and dominates many invertebrate genomes.Mol Biol Evol38(11):5005-5020.
Nowell R.W., Wilson C.G., Almeida P., Schiffer P.H., Fontaneto D., Becks L., Rodriguez F., Arkhipova I.R., and Barraclough T. (2021). Evolutionary dynamics of transposable elements in bdelloid rotifers.Elife10:63194..
Schön I., Rodriguez F., Dunn M., Martens K., Shribak M., and Arkhipova I.R. (2021). A survey of transposon landscapes in the putative ancient asexual ostracod Darwinula stevensoni.Genes (Basel), 12(3):401.
Vakhrusheva O.A., Mnatsakanova E.A., Galimov Y.R., Neretina T.V., Gerasimov E.S., Naumenko S.A., Ozerova S.G., Zalevsky A.O., Yushenova I.A., Rodriguez F., Arkhipova I.R., Penin A.A., Logacheva M.D., Bazykin G.A., and Kondrashov A.S. (2020). Genomic signatures of recombination in a natural population of the bdelloid rotifer Adineta vaga.Nat. Commun. 11(1):6421.
Arkhipova I.R. (2020). Metagenome proteins and database contamination.mSphere 5:e00854-20..
Funikov S.Y., Rezvykh A.P., Kulikova D.A., Zelentsova E.S., Protsenko L.A., Chuvakova L.N., Tyukmaeva V.I., Arkhipova I.R., and Evgen’ev M.B. (2020). Adaptation of gene loci to heterochromatin in the course of Drosophila evolution is associated with insulator proteins.Sci Rep 10(1):11893.
Sharko F.S., Nedoluzhko A.V., Lê B.M., Tsygankova S.V., Boulygina E.S., Rastorguev S.M., Sokolov A.S., Rodriguez F., Mazur A.M., Polilov A.A., Benton R., Evgen'ev M.B., Arkhipova I.R., Prokhortchouk E.B., and Skryabin K.G. (2019). A partial genome assembly of the miniature parasitoid wasp, Megaphragma amalphitanum.PLoS One, 14(12): e0226485.
Arkhipova, I.R., and Yushenova, I.A. (2019). Giant transposons in eukaryotes: is bigger better? Genome Biol. Evol., 11(3), 906-918.
Yushenova I.A., and Arkhipova I.R. (2018). Biochemical properties of bacterial reverse transcriptase-related (rvt) gene products: multimerization, protein priming, and nucleotide preference.Curr. Genet. 64(6):1287-1301.
Abrams J.M., Arkhipova I.R., Belfort M., Boeke, J.D., Curcio, M.J., Faulkner, G.J., Goodier, J.L., Lehmann, R., and Levin, H.L. (2018). Meeting report: mobile genetic elements and genome plasticity 2018.Mob. DNA 9:21.
Arkhipova, I.R. (2018). Neutral theory, transposable elements, and eukaryotic genome evolution.Mol. Biol. Evol. 35(6): 1332-1337.
Rodriguez, F., and Arkhipova, I.R. (2018). Transposable elements and polyploid evolution in animals.Curr. Opin. Genet. Dev 49:115-123.
Arkhipova I.R., Yushenova I.A., and Rodriguez F. (2017). Giant reverse transcriptase-encoding transposable elements at telomeres.Mol. Biol. Evol. 34(9):2245-57.
Rodriguez F., Kenefick A.W., and Arkhipova I.R. (2017).LTR retrotransposons from bdelloid rotifers capture additional ORFs shared between highly diverse retroelement types.Viruses, 9(4): E78.
Arkhipova, I.R. (2017). Using bioinformatic and phylogenetic approaches to classify transposable elements and understand their complex evolutionary histories.Mob. DNA 8:19.
Arkhipova I.R., Rice P.A. (2016). Mobile Genetic Elements: In Silico, In Vitro, In Vivo.Mol. Ecol. 25(5):1027-31..
Rodriguez F., and Arkhipova I.R. (2016). Multitasking of the piRNA silencing machinery: targeting transposable elements and foreign genes in the bdelloid rotifer Adineta vaga.Genetics 203(1):255-68.